Job Description

1. Build and reproduce pipelines to process all types of DNA and RNA sequencing data
2. Perform quality control over all data being generated locally by the Genomics Bench
3. Maintain all source code within Git and Dockerize all pipeline components
4. Deploy pipelines on AWS and run on-demand
5. Liaise with the Scaling Unit to convert pipelines into scalable workflows
6. To build and maintain general infrastructure components of the GeDaC cloud-based platform (e.g. genomic databases)
7. Provide on-demand bioinformatics support for CSI investigators
8. Any other services as requested by supervisors

Qualifications

Masters or Ph.D. in genetics genomics bioinformatics computational biology or related fields with 2 years of working experience
Solid foundation in biology and genomics
Experience processing and analyzing high-throughput sequencing data
Appreciable Python and/or R programming skills
Familiarity with cluster (including HPC) and/or cloud computing
Excellent written and spoken English

Preferences
Experience analyzing legacy data types (microarrays CGH arrays etc.)
Authorship on scientific publications
Software development experience
Experience with collaborative software development via github/gitlab